Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs17206679 chr19:49342237 C/G 7.92E-13 176 16.17 12.87 1.37 KM Plot
PAAD rs17206686 chr19:49356317 A/G 5.3E-13 178 16.2 12.87 1.37 KM Plot
PAAD rs17206693 chr19:49360252 C/G 1.65E-12 173 16.2 13.13 1.37 KM Plot
PAAD rs17206700 chr19:49361255 A/G 5.92E-13 178 16.2 12.4 1.37 KM Plot
PAAD rs17206707 chr19:49361441 A/C 3.17E-13 178 16.28 12.2 1.37 KM Plot
PAAD rs17206714 chr19:49362001 T/A 6.88E-13 177 16.28 12.4 1.37 KM Plot
PAAD rs1726141 chr6:111970576 A/G 0.000129 178 20.47 12.2 17.38 KM Plot
PAAD rs1726142 chr6:111970527 T/G 0.000129 178 20.47 12.2 17.38 KM Plot
PAAD rs1726144 chr6:111969626 A/G 0.000129 178 20.47 12.2 17.38 KM Plot
PAAD rs17272645 chr19:49342366 C/G 5.37E-13 178 1.37 13.13 16.18 KM Plot
PAAD rs17272658 chr19:49355405 C/T 1.22E-12 174 16.17 12.87 1.37 KM Plot
PAAD rs17272666 chr19:49356294 T/C 9.98E-13 176 16.2 13.5 1.37 KM Plot
PAAD rs17272673 chr19:49362992 C/A 6.88E-13 177 16.28 12.4 1.37 KM Plot
PAAD rs17272680 chr19:49364511 A/G 5.22E-13 178 1.37 12.6 16.28 KM Plot
PAAD rs17293173 chr11:34673520 C/G 1.81E-5 175 15.55 12.55 3.67 KM Plot